In 2040 AD on the colonial planet Eden, the Ministry of Defence is testing and developing a transforming super-stealth aircraft, a new advanced weapon to counter alien attacks. Isamu Dyson is an extrovert jet fighter maverick assigned as a new test pilot on project Super Nova. Competition heats up when he discovers that his old rival Guld Bowman is the test pilot for the competing project. The arrival of Myung Fang Lone, a mutual ex-girlfriend, adds more tension to the conflict.

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Prequel: Choujikuu Yousai Macross
Sequel: Macross 7
Alternative version: Macross Plus Movie Edition